0.1.19

0.1.19#

Key Modifications#

  • Fixed vf.pp.writeFixedPaths(), which previously used incorrect indexing inside the function, causing the unintended removal of important and nonredundant contigs.

  • Merged the vf.pp.update_mkCNSdir_missingEdge() function into vf.pp.mkCNSdir(). Users should now use vf.pp.mkCNSdir() exclusively to generate the directory for running verkko-consensus. If you have inserted a new node using vf.tl.insertGap() during gap filling, please run this with missingEdge=True. For more details, refer to the function’s description.

What’s New?#

  • vf.pl.barCovKmer

Fixes and Updates#

  • The vf.pp.searchNode() function now reports. No paths found if the specified list of nodes is not present in the graph.

  • vf.tl.calQV() now includes new parameters: showOnly=False, trio=False, and contig_prefix=["dam", "sire"]. Please refer to the API section for details.

  • Fixed vf.pp.find_intra_telo() to get the maximum telomere percentage when merging the windowns.

  • Fixed vf.pl.percTel() to ensure the heatmap’s y-axis is sorted by natural chromosome order.

  • Add legend to vf.pl.contigPlot.

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