verkkofillet.tl.mkMeryl

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verkkofillet.tl.mkMeryl#

verkkofillet.tl.mkMeryl(obj, fofn, working_directory='kmer', prefix='assembly', fasta='assembly.fasta', k=31, showOnly=False)[source]#

Create meryl database for k-mer counting.

Parameters:

  • obj – Object containing the verkkoDir attribute.

  • fofn – Path to the file of filenames (FOFN).

  • prefix – Prefix for the meryl output.

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