verkkofillet.pp.find_hic_support

verkkofillet.pp.find_hic_support#

verkkofillet.pp.find_hic_support(obj, node, hic_support_file='8-hicPipeline/hic.byread.compressed', max_print=20, scfmap_file='assembly.scfmap', exclude_chr=['chrX_mat', 'chrY_pat'])[source]#

Find HiC support for a specific node.

Parameters:

  • obj – The VerkkoFillet object to be used.

  • node – The node for which to find HiC support.

  • hic_support_file – The path to the HiC support file. Default is “8-hicPipeline/hic.byread.compressed”.

  • max_print – The maximum number of results to display. Default is 20.

  • scfmap_file – The path to the scfmap file. Default is “assembly.scfmap”.

  • exclude_chr – A list of chromosomes to exclude from the results. Default is None.

Returns:

dot plot of HiC support for the specified node.

Contents