verkkofillet.tl.getT2T#
- verkkofillet.tl.getT2T(obj, fasta='assembly.fasta', working_directory='stats')[source]#
Run the script to calculate assembly statistics, including contig presence, telomere regions, and gap locations.
- Parameters:
obj – An object that contains a .stats attribute, which should be a pandas DataFrame.
fasta – verkko assembly.
working_directory – output directory
- Returns:
{working_directory}/assembly.gaps.bed {working_directory}assembly.t2t_ctgs {working_directory}assembly.t2t_scfs {working_directory}assembly.telomere.bed