verkkofillet.pp.connectContigs

verkkofillet.pp.connectContigs(obj, contig, contig_to, at='left', gap='[N5000N:connectContig]', flip=False)

Connects two contigs by adding a gap between them.

Parameters:

• obj – The VerkkoFillet object to be used.

• contig – The name of the contig to connect.

• contig_to – The name of the contig to connect to.

• at – The position to connect the contig. Default is “left”. Other option is “right”.

• gap – The gap to add between the contigs. Default is “[N5000N:connectContig]”.

• flip – Whether to flip the path from contig. Default is False. If True, the path will be flipped.

Returns:

The updated VerkkoFillet object with new gap added.