verkkofillet.tl.graphAlign#
- verkkofillet.tl.graphAlign(obj, graph='assembly.homopolymer-compressed.gfa', threads=1, GraphAligner_path='GraphAligner', prefix=None, ReadList=None, alignNode=False, diploid_heuristic_cache=None, seeds_mxm_cache=None, working_directory='graphAlignment', showOnly=False)[source]#
Align ONT reads to the graph.
- Returns:
alignment files