📣 News

📣 News#

🎉 v0.1.24 released#

A small maintenance release with debugging and reliability improvements to getChrNames.sh:

  • The neighborhood executable bundled alongside the script is now picked up automatically — no manual install required.

📄 Full changelog: v0.1.24

🎉 v0.1.23 released#

The latest release of verkko-fillet is out, with a new automated preprocessing CLI, gzipped FASTA support across the chromosome-renaming pipeline, mashmap caching, plotting improvements (PDF by default, force overwrite, tighter layouts), and several QoL fixes.

  • 📄 Full changelog: v0.1.23

  • 🆕 New tutorial: Automatic Preprocessing — run the standard QC + chromosome-assignment + telomere pipeline end-to-end with a single command.

We strongly recommend upgrading to the latest version for refining and cleaning Verkko assemblies.

📚 Previous highlights#

v0.1.21#

This release shipped numerous updates, new features, and bug fixes. See the v0.1.21 release notes.

Tutorial: Recovering T2T contigs#

A comprehensive tutorial on recovering Telomere-to-Telomere (T2T) assemblies is available. It covers detecting internal telomeres, reconnecting broken contigs using chromosome-assignment information, and linking small nodes to main contigs via graph alignment.

v0.1.19#

Bug fixes and refinements. See the v0.1.19 release notes.

v0.1.18 — major update#

Numerous new functions and FilletObj attributes. See the v0.1.18 release notes.

Note: v0.1.18 introduced new Python dependencies, including scikit-learn.

verkko-fillet on PyPI — 2025-01-21#

verkko-fillet is now installable via pip:

pip install verkkofillet
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