verkkofillet.pp.writeFixedPaths

verkkofillet.pp.writeFixedPaths(obj, save_path='assembly.fixed.paths.tsv', save_gaf='assembly.fixed.paths.gaf', save_gapNode='gap.nodes.tsv')

Writes the fixed paths to a file.

Parameters:

• obj – The VerkkoFillet object to be used.

• save_path – The file path to save the fixed paths. Default is “assembly.fixed.paths.tsv”.

• save_gaf – The file path to save the fixed gaf. Default is “assembly.fixed.paths.gaf”.

Returns:

The fixed paths and gaf saved to the specified file paths.