verkkofillet.pp.readGaf

verkkofillet.pp.readGaf(obj, gaf='graphAlignment/verkko.graphAlign_allONT.gaf', force=False)

Reads a GAF file and stores it as a pandas DataFrame in the provided object.

Parameters:

• obj – An object where the parsed GAF data will be stored (as obj.gaf).

• gaf – Path to the GAF file to be loaded.

Returns:

obj – The updated object with the gaf attribute containing the DataFrame.

Return type:

object