verkkofillet.tl.sortContig

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verkkofillet.tl.sortContig#

verkkofillet.tl.sortContig(ori_fasta, sorted_fasta=None, sort_by='hap')[source]#

Sorts sequences in a FASTA file based on a custom sorting criterion (e.g., ‘hap’, ‘chr’).

Parameters:

  • ori_fasta – Path to the original FASTA file.

  • sorted_fasta – Path to save the sorted FASTA file. If None, it will be generated with surfix of “_sorted.fasta”

  • sort_by – Sorting criteria (default is “hap”). [‘hap’,’chr’]

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