verkkofillet.pp.read_Verkko

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verkkofillet.pp.read_Verkko#

verkkofillet.pp.read_Verkko(verkkoDir, verkko_fillet_dir=None, paths_path='assembly.paths.tsv', force=False, scfmap_path='assembly.scfmap', version=None, species=None, graph='assembly.homopolymer-compressed.noseq.gfa', color='assembly.colors.csv', lock_original_folder=True, showOnly=False, longLog=False)[source]#

Prepares the Verkko environment by creating necessary directories, locking the original directory, and loading the paths file for further processing.

Parameters:

  • verkkoDir – Base directory of Verkko data.

  • verkko_fillet_dir – Target directory for fillet data. Defaults to None.

  • paths_path – Path to ‘assembly.paths.tsv’ file. Defaults to ‘assembly.paths.tsv’.

  • version – Version of the data. Defaults to None.

  • species – Species name. Defaults to None.

  • lock_original_folder – Whether to lock the original directory. Defaults to True.

Returns:

obj – A FilletObj instance with the configured directories and loaded paths data.

Return type:

FilletObj

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