verkkofillet.tl.insertGap

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verkkofillet.tl.insertGap#

verkkofillet.tl.insertGap(gapid, split_reads, max_end_clip=50000, outputDir='missing_edge', graph='assembly.homopolymer-compressed.gfa', verkko_path=None)[source]#

Find ONT support for Inserts a gap into the graph using split reads.

Parameters:

  • gapid – Identifier for the gap.

  • split_reads – Pandas DataFrame containing reads information.

  • outputDir – Output directory for the results.

  • alignGAF – Path to alignment GAF file.

  • graph – Path to graph file.

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