Plotting : pl

Plotting functions

Plotting

pl.completePlot	Generates a bar plot showing contig completeness grouped by reference chromosome and haplotype.
pl.contigLenPlot	Generates a bar plot showing length of contig by haplotype.
pl.contigPlot	Generates a heatmap of statistics for each haplotype and contig.
pl.qvPlot	Generates a bar plot showing QV stats by haplotype.
pl.showMashmapOri	Generates a bar plot showing the covered regions of the assembly for each reference.
pl.n50Plot	Generates a line plot showing the distribution of contig lengths.
pl.nodeMashmapBlockSize	Plot the top 10 nodes with the largest block size aligned to a specific node.
pl.percTel	Generates a heatmap showing the telomere percentage by contig.
pl.plotHist_readOnNode	Generates a histogram showing the distribution of reads on a node.