verkkofillet.pp.updateCNSdir_missingEdges

verkkofillet.pp.updateCNSdir_missingEdges#

verkkofillet.pp.updateCNSdir_missingEdges(obj, new_folder_path, missing_edge_dir='missing_edge', final_gaf='assembly.fixed.paths.gaf', showOnly=False, longLog=False)[source]#

Updates the CNS directory by handling missing edges and creating necessary symbolic links or files.

Parameters:

  • obj – Object containing the original verkko directory path.

  • new_folder_path – Path to the new folder to be updated.

Returns:

new folder with updated files and symbolic links for missing edges

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